If this is a continuous counter flow kiln...it probably wont work. If it is a continuous kiln where you load wet stacks one end , and pull dry stacks on the other end - It can work, and has been done. The pull rate you will have to determine through trial and error. Being continuous, you will probably only pull out and replace one stack at a time....and only once desired MC% levels are reached.
Just remember that with thicker dimensions on the one track, air flow will be affected (reduced)if all stickers are same dimension. So if you fill the kiln with thinner same dimension loads on both tracks, drying rate will improve with better air flow