Hi Ingo,
Welcome to the site
It will be difficult to comment...one would need a solid experience and exposure to both technologies to identify all the advantages and disadvantages.
At first glance however, I would prefer Linear continuous. Generally because you have better control over the drying condition in each zone than what one would expect to find in Counter flow kilns. It should be easier to speed up drying with more controllable results in Linear vs Counter flow. This said, counter flow should be more forgiving (but not more flexible).